/**
 * This function writes the header part of the page including the logos and menus.
 *
 * m1: index of the active item on the main (first) menu
 * m2: index of the active item on the sub (second) menu
 *
 * If there is no submenu in the page, then m2 should be 0.
 */
function writeHeader(m1, m2)
{
//	document.onselectstart=new Function ("return false");
//	document.oncontextmenu=new Function("return false");
	document.write("<table width=\"700\" align=\"center\"><tr><td>	");
	document.write("	<table width=\"100%\">	");
	document.write("		<tr><td class=\"logoleft\">	");
	document.write("			<a href=\"http://www.bilkent.edu.tr/~bcbi\" style=\"color:white\"><img src=\"images/BCBI-logo.gif\" border=\"0\"><br>Bilkent Center for<br>Bioinformatics</a>");
	document.write("		</td><td>	");
	document.write("			<table align=\"center\">	");
	document.write("				<tr><td>	");
	document.write("					<table width=\"100%\" align=\"center\"><tr>	");
	document.write("						<td class=\"logo\">	");
 	document.write("							PATIKA<em><span style='color:#c85555; font-size:24px'>web</span></em>	");
	document.write("						</td></tr>	");
	document.write("					</table>	");
	document.write("				</td></tr>	");
	document.write("				<tr><td class=\"slogan\">	");
 	document.write("					[ <em>Pictures of your favorite pathway, just a few clicks away...</em> ]	");
	document.write("				</td></tr>	");
	document.write("				<tr><td>	");
	document.write("					<table class=\"menu\" align=\"center\" cellspacing=\"1\" border=\"0\"><tr>	");
	document.write("						<td class=\"menu"); if (m1==1) document.write("Act"); document.write("\"><a href=\"index.html\">Documentation</a></td><td></td>	");
	document.write("						<td class=\"menu"); if (m1 == 3) document.write("Act"); document.write("\"><a href=\"software.html\"> Software </a></td><td></td>	");
 	document.write("						<td class=\"menu"); if (m1==5) document.write("Act"); document.write("\"><a href=\"http://www.patika.org/database/\" target=\"_blank\"> Database </a></td><td></td>	");
 	document.write("						<td class=\"menu"); document.write("\"><a href=\"http://www.patika.org/research/index.html#publications\" target=\"_blank\"> Publications </a></td><td></td>	");
 	document.write("						<td class=\"menu"); if (m1==2) document.write("Act"); document.write("\"><a href=\"http://www.patika.org/people/\" target=\"_blank\"> People </a></td><td></td>	");
	document.write("						<td class=\"menu"); if (m1==4) document.write("Act"); document.write("\"><a href=\"contact.html\">Contact</a></td><td></td>	");
	document.write("					</tr></table>	");
	document.write("				</td></tr>	");
	if (m1 == 1) { /* Documentation submenu */
		document.write("				<tr><td>	");
		document.write("					<table class=\"submenu\" align=\"center\"><tr>	");
 		document.write("						<td class=\"submenu"); if (m2==1) document.write("Act"); document.write("\"><a href=\"index.html\"> Overview </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==2) document.write("Act"); document.write("\"><a href=\"PATIKAweb-2.0.Key-Features-SS.pdf\" target=\"_blank\"> Key Features </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==3) document.write("Act"); document.write("\"><a href=\"PATIKAweb-2.0.Brochure.pdf\" target=\"_blank\"> Brochure </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==4) document.write("Act"); document.write("\"><a href=\"PATIKAweb-2.0.Quick-Start.pdf\" target=\"_blank\"> Quick Start </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==5) document.write("Act"); document.write("\"><a href=\"PATIKAweb-2.1.UG.pdf\" target=\"_blank\"> User's Guide </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==6) document.write("Act"); document.write("\"><a href=\"http://www.patika.org/research/ontology.html\" target=\"_blank\"> Ontology </a></td>	");
		document.write("					</tr></table>	");
 		document.write("				</td></tr>	");
 	}
  	if (m1==3) { /* Software submenu */
 		document.write("				<tr><td>	");
 		document.write("					<table class=\"submenu\" align=\"center\"><tr>	");
 		document.write("						<td class=\"submenu"); if (m2==1) document.write("Act"); document.write("\"><a href=\"software.html\"> Overview </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==2) document.write("Act"); document.write("\"><a href=\"querying.html\"> Querying </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==4) document.write("Act"); document.write("\"><a href=\"patikamad.html\"> Microarray Analysis </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==3) document.write("Act"); document.write("\"><a href=\"http://www.patika.org/research/layout.html\" target=\"_blank\"> Layout </a></td>	");
 		document.write("						<td class=\"submenu"); if (m2==5) document.write("Act"); document.write("\"><a href=\"biopax-sbml.html\"> BioPAX/SBML </a></td>	");
		document.write("					</tr></table>	");
		document.write("				</td></tr>	");
	}
	document.write("			</table>	");
	document.write("		</td><td class=\"logoright\">	");
	document.write("			<a href=\"http://www.patika.org\" style=\"color: white\"><img src=\"images/patika-icon.gif\" border=\"0\"></img><br>PATIKA Project<br>Home</a>	");
	document.write("		</td></tr></table>		");
	document.write("				<tr><td height=4/></tr>");
	document.write("	<tr><td class=\"bodytext\">	");
}
function endDocument()
{
	document.write("</td></tr><tr><td></td></tr><tr><td class=\"endingtext\" margin=\"0\">");
 	document.write("Copyright &copy; 2006 by Bilkent Center for Bioinformatics (BCBI). All rights reserved.");
	document.write("</td></tr></table></body></html>");
}
function popUpWindow(URLStr, left, top, width, height)
{
  open(URLStr, 'popUpWin', 'toolbar=no,location=no,directories=no,status=no,menubar=no,scrollbars=yes,resizable=yes,copyhistory=yes,width='+width+',height='+height+',left='+left+', top='+top+',screenX='+left+',screenY='+top+'');
}