| SBGNViz | Methods and Tools for Effective Analysis of Biological Processes with SBGN Diagrams |
| Chisio | Compound or Clustered Graph Visualization Tools |
| PVS - VISIBIOweb | Pathway Visualization Services |
| ChiBE | Chisio BioPAX Editor |
| cBio | cBio Cancer Genomics Portal of MSKCC |
| Cytoscape Web | ![]() |
| [2002-2011] | PATIKA - Pathway Analysis Tool for Integration and Knowledge Acquisition |
| [2000-2001] | Complexity Management Techniques in Graph Visualization Cntd. |
| [2000] | Complexity Management Techniques in Graph Visualization |