The i-Vis Research Lab conducts or particaptes in following projects and tools:

[2018-] Efficient Layout Algorithms for Compound Graphs With Support for Ports and Constraints
[Funded by TUBITAK]
[2014-] Newt Pathway Viewer and Editor
[In collaboration with the Demir Lab at OHSU, USA, and EISBM, France]
[2016-] PathwayMapper (An Interactive and Collaborative Graphical Curation Tool for Cancer Pathways)
[In collaboration with MSKCC, USA]
[2014-2016] SBGNViz (Methods and Tools for Effective Analysis of Biological Processes with SBGN Diagrams)
[In collaboration with the Demir Lab at OHSU, USA][Funded by TUBITAK]
[2011-] cBio Cancer Genomics Portal network views
[In collaboration with MSKCC & Dana-Farber Cancer Institute / Harvard Medical School, USA, and others]
[2014-] Cytoscape.js compound support and various extensions
[In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada]
[2011-2013] compound support
[In collaboration with Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Canada]
[2007-] ChiBE (Chisio BioPAX Editor)
[In collaboration with the Demir Lab at OHSU, USA and MSKCC, USA]
[2006-2009] PVS - VISIBIOweb (Pathway Visualization Services)
[2006-2014] Chisio (Compound or Clustered Graph Visualization Tools)
[Funded by TUBITAK]
[2000-2011] PATIKA (Pathway Analysis Tool for Integration and Knowledge Acquisition)
[Funded by TUBITAK]
[2000-2001] Complexity Management Techniques in Graph Visualization Cntd.
[Funded by Tom Sawyer Software, USA]
[2000] Complexity Management Techniques in Graph Visualization
[Funded by Tom Sawyer Software, USA]

The lab is also involved in community projects such as BioPAX (Biological Pathways Exchange) and SBGN (Systems Biology Graphical Notation).