[CV] I joined Bilkent in the fall of 1998, before which I worked for Tom Sawyer Software for three years.
M.S., Ph.D. in Computer Science, 1991, 1995, Rensselaer Polytechnic Institute, Troy, NY.
B.S. in Computer Engineering, 1989, Middle East Technical Univ., Ankara, Turkey. >>
|My interests fall into the areas of information visualization (e.g. biological pathway and big data visualization), bioinformatics (pathway informatics), and graph algorithms (e.g. graph layout algorithms and query algorithms for graph-based knowledgebases). I lead the i-Vis Research Lab; projects conducted or participated in include Newt, PathwayMapper, cBio Cancer Genomics Portal, ChiBE, Chisio, Cytoscape.js, and PATIKA. >>|
|Professional||Editor, SBGN (Systems Biology Graphical Notation), 2016-present; Co-founder and Director, BCBI (Bilkent Center for Bioinformatics), 2002-2010; National Young Scientist Career Development Award, TUBITAK (The Scientific and Technical Research Council of Turkey), 2005-2011; Conference Chair and Program Committee Member, (Combinatorial Pattern Matching) CPM 2004. >>|
|Teaching||Nowadays I teach Fundamental Structures of Computer Science II, Object-Oriented Software Eng., Algorithms I, and Automata Theory and Formal Languages >>|
|Other||Miscellenaous forms for application for summer internship and request for a reference letter and information on senior term projects can be obtained here.|